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adjust_spreads()
Adjustment of climate summary stat values during envelope parameter calculation
aquamaps_galemys_pyrenaicus
Example grid cell data for one specific species (Galemys pyrenaicus), approx 359 rows
aquamaps_hc
Half degree cell metadata (only identifiers and coordinates)
aquamaps_hcaf_eu
Half degree cell authority file for EU with bioclimate data (8,493 cells)
aquamaps_hcaf_world
Half degree cell authority file for the world (259,200 cells) with bioclimate data
aquamaps_presence_basins
Example grid cell data for various species of a certain category with presence in a basin (approx 410 000 rows)
aquamaps_presence_occurrences
Example grid cell data for various species (approx 40 000 rows)
aquamaps_qc
Quarter degree cell metadata (only identifiers and coordinates)
aquatic_hcaf
Half degree cell data (various bioclimate layers)
calc_prob()
Function to calculate probability per individual bioclimate variable given "spread" summary stats for a single environment envelope parameter
calc_probs()
Function to calculate probabilities
calc_probs_by_species()
Retrieve environmental, determine spread and return probabilities for a given species, using the bundled reference data
calc_spreads()
Calculate environmental data spread summaries given environmental data for a species
calc_spreads_by_species()
Retrieve environmental data and determine spread for a given species, using the bundled reference data
default_clim_vars()
Default bioclimate variable names in raquamaps
default_hcaf()
Default half degree cells reference data, including geometry and bioclimate measurements, for demonstrational purposes
default_presence()
Default presence data for several species, for demonstrational purposes
default_species()
Default species in raquamaps
default_species_list()
Default set of species for demonstrational purposes
export_am_csv_tmp()
Export results from as csv (tempfile)
geocode_nominatim()
Lookup coordinates using the Nominatim OSM API
get_am_name_uris()
Get aqua maps identifiers for a latin name
get_dropbox_file()
Download a dropbox folder content as a zip-file
hcaf_by_species()
Default half degree cells reference data, including geometry and bioclimate measurements, for demonstrational purposes, filtered for a specific species and for specific bioclimate measurements
nativerange()
Get native range dataset from aquamaps.org given latin name
occs_ggmap_gridded()
Plots a raster layer as a gridded map using ggplot
occs_ggmap_gridded_polys()
Plots a raster grid using ggplot and polygons
occs_ggmap_points()
Plots an occurrence data frame with points as a map using ggplot
occs_webmap_gridded()
Plots a raster grid using leaflet
plot_stepped_raster()
Plot raster data in raquamaps style
presence_rgbif()
Get presence data using rgbif
r2df_points()
Converts a raster grid into a dataframe of points which can be plotted with ggplot
r2df_polygons()
Converts a raster grid into a dataframe of closed polygons which can be plotted with ggplot
rasterize_occs()
Converts points in data frame into raster
rasterize_presence()
Converts presence data from rgbif into raster data
rgbif_galemys_pyrenaicus
Example grid cell data for one specific species (Galemys pyrenaicus)
rgbif_great_white_shark
Example grid cell data for one specific species (Great White Shark)
stepped_raster()
Discretize a raster into intervals or steps for chloropeth maps
which_cells()
Return all grid cells identifiers where the specified species occurs
which_cells_in_raster()
Raster grid cell identifiers with presence